Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
— The phenomenal growth of the Internet in the last decade and society’s increasing dependence on it has brought along, a flood of security attacks on the networking and compu...
Abstract. We present a bit-parallel technique to search a text of length n for a regular expression of m symbols permitting k differences in worst case time O(mn/ logk s), where s...
We present a new index for approximate string matching. The index collects text q-samples, that is, disjoint text substrings of length q, at fixed intervals and stores their posi...
Gonzalo Navarro, Erkki Sutinen, Jani Tanninen, Jor...
Deep Packet Inspection (DPI) involves searching a packet's header and payload against thousands of rules to detect possible attacks. The increase in Internet usage and growing...