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» Multiple RNA Structure Alignment
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RECOMB
2006
Springer
14 years 9 months ago
Structural Alignment of Pseudoknotted RNA
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
ISAAC
2004
Springer
114views Algorithms» more  ISAAC 2004»
14 years 1 months ago
Structural Alignment of Two RNA Sequences with Lagrangian Relaxation
RNA is generally a single-stranded molecule where the bases form hydrogen bonds within the same molecule leading to structure formation. In comparing different homologous RNA mole...
Markus Bauer, Gunnar W. Klau
CPM
2009
Springer
114views Combinatorics» more  CPM 2009»
14 years 3 months ago
Fast RNA Structure Alignment for Crossing Input Structures
Rolf Backofen, Gad M. Landau, Mathias Möhl, D...
BMCBI
2008
109views more  BMCBI 2008»
13 years 8 months ago
ConStruct: Improved construction of RNA consensus structures
Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
NAR
1998
104views more  NAR 1998»
13 years 8 months ago
The ribonuclease P database
Ribonuclease P is the endoribonuclease responsible for the removal of leader sequences from tRNA precursors. Ribonuclease P is a ribonucleoprotein, and in bacteria the RNA alone i...
James W. Brown