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    RECOMB
    2007
    Springer
    135views Computational Biology» more  RECOMB 2007»
    Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences
    14 years 7 months ago
    Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences
    Download  www.cs.ucr.edu
    Yue Lu, Sing-Hoi Sze
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    BIBM
    2009
    IEEE
    206views Bioinformatics» more  BIBM 2009»
    ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties
    14 years 2 months ago
    ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties
    Download  www.ncbi.nlm.nih.gov
    —We present a new algorithm, ChemAlign, that uses physicochemical properties and secondary structure elements to create biologically relevant multiple sequence alignments (MSAs)....
    Hyrum Carroll, Mark J. Clement, Quinn Snell, David...
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    STOC
    2000
    ACM
    156views Algorithms» more  STOC 2000»
    Near optimal multiple alignment within a band in polynomial time
    13 years 11 months ago
    Near optimal multiple alignment within a band in polynomial time
    Download  www.cs.cityu.edu.hk
    Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
    Ming Li, Bin Ma, Lusheng Wang
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    NAR
    2006
    128views more  NAR 2006»
    Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
    13 years 7 months ago
    Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
    Download  www.plantsciences.ucdavis.edu
    Expresso is a multiple sequence alignment server that aligns sequences using structural information. The user only needs to provide sequences. The server runs BLAST to identify cl...
    Fabrice Armougom, Sébastien Moretti, Olivie...
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    BIOINFORMATICS
    1999
    82views more  BIOINFORMATICS 1999»
    BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs
    13 years 7 months ago
    BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs
    Download  bioinf.mpi-inf.mpg.de
    Julie Dawn Thompson, Frédéric Plewni...
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