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» NEC for Gene Expression Analysis
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BMCBI
2007
123views more  BMCBI 2007»
13 years 10 months ago
Robust clustering in high dimensional data using statistical depths
Background: Mean-based clustering algorithms such as bisecting k-means generally lack robustness. Although componentwise median is a more robust alternative, it can be a poor cent...
Yuanyuan Ding, Xin Dang, Hanxiang Peng, Dawn Wilki...
BMCBI
2005
135views more  BMCBI 2005»
13 years 10 months ago
A robust two-way semi-linear model for normalization of cDNA microarray data
Background: Normalization is a basic step in microarray data analysis. A proper normalization procedure ensures that the intensity ratios provide meaningful measures of relative e...
Deli Wang, Jian Huang, Hehuang Xie, Liliana Manzel...
NAR
2011
290views Computer Vision» more  NAR 2011»
13 years 26 days ago
AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
Phytohormone studies enlightened our knowledge of plant responses to various changes. To provide a systematic and comprehensive view of genes participating in plant hormonal regul...
Zhiqiang Jiang, Xiao-Chuan Liu, Zhiyu Peng, Yinan ...
ICDM
2002
IEEE
158views Data Mining» more  ICDM 2002»
14 years 3 months ago
Adaptive dimension reduction for clustering high dimensional data
It is well-known that for high dimensional data clustering, standard algorithms such as EM and the K-means are often trapped in local minimum. Many initialization methods were pro...
Chris H. Q. Ding, Xiaofeng He, Hongyuan Zha, Horst...
KDD
2006
ACM
142views Data Mining» more  KDD 2006»
14 years 10 months ago
Automatic mining of fruit fly embryo images
We present FEMine, an automatic system for image-based gene expression analysis. We perform experiments on the largest publicly available collection of Drosophila ISH (in situ hyb...
Jia-Yu Pan, André G. R. Balan, Eric P. Xing...