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» NUPACK: Analysis and design of nucleic acid systems
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BMCBI
2002
137views more  BMCBI 2002»
13 years 7 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
14 years 1 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
JIB
2007
124views more  JIB 2007»
13 years 7 months ago
Analysis of integrated biomolecular networks using a generic network analysis suite
The informative value of biomolecular networks has shifted from being solely information resources for possible cellular partners (whether these embody proteins, (ribo)nucleic aci...
Matthias Oesterheld, Hans-Werner Mewes, Volker St&...
KBSE
2003
IEEE
14 years 24 days ago
Testing Database Transaction Concurrency
Database application programs are often designed to be executed concurrently by many clients. By grouping related database queries into transactions, DBMS systems can guarantee th...
Yuetang Deng, Phyllis G. Frankl, Zhongqiang Chen
BMCBI
2005
132views more  BMCBI 2005»
13 years 7 months ago
CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
Background: Protein-protein, protein-DNA and protein-RNA interactions are of central importance in biological systems. Quadrapole Time-of-flight (Q-TOF) mass spectrometry is a sen...
Yong Tang, Yingfeng Chen, Cheryl F. Lichti, Roger ...