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» New Algorithms for SIMD Alignment
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CGF
2006
191views more  CGF 2006»
13 years 7 months ago
A Robust Two-Step Procedure for Quad-Dominant Remeshing
We propose a new technique for quad-dominant remeshing which separates the local regularity requirements from the global alignment requirements by working in two steps. In the fir...
Martin Marinov, Leif Kobbelt
BMCBI
2005
100views more  BMCBI 2005»
13 years 7 months ago
EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments
Background: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold ...
Jean-Christophe Gelly, Laurent Chiche, Jér&...
IPPS
2007
IEEE
14 years 2 months ago
Software and Algorithms for Graph Queries on Multithreaded Architectures
Search-based graph queries, such as finding short paths and isomorphic subgraphs, are dominated by memory latency. If input graphs can be partitioned appropriately, large cluster...
Jonathan W. Berry, Bruce Hendrickson, Simon Kahan,...
ARITH
2007
IEEE
14 years 2 months ago
Decimal Floating-Point Adder and Multifunction Unit with Injection-Based Rounding
Shrinking feature sizes gives more headroom for designers to extend the functionality of microprocessors. The IEEE 754R working group has revised the IEEE 754-1985 Standard for Bi...
Liang-Kai Wang, Michael J. Schulte
ESCIENCE
2006
IEEE
14 years 1 months ago
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems
Bioinformatics algorithms such as sequence alignment methods based on profile-HMM (Hidden Markov Model) are popular but CPU-intensive. If large amounts of data are processed, a s...
Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, La...