429 search results - page 6 / 86 » New Algorithms for SIMD Alignment |
GECCO
2008
Springer
13 years 8 months ago
2008
Springer
This paper introduces GLOCSA as a new scoring function to rate multiple sequence alignments. It is intended to be simple, considering the whole alignment at once and reflecting t...
BMCBI
2005
13 years 7 months ago
2005
Background: We introduce GASH, a new, publicly accessible program for structural alignment and superposition. Alignments are scored by the Number of Equivalent Residues (NER), a q...
BIOCOMP
2006
13 years 9 months ago
2006
Computation of multiple sequence alignments is one of the major open problems in computational molecular biology. The purpose of this study was to provide a new method, PAC (Progre...
BMCBI
2007
13 years 7 months ago
2007
Background: Multiple sequence alignment is fundamental. Exponential growth in computation time appears to be inevitable when an optimal alignment is required for many sequences. E...
WABI
2004
Springer
14 years 1 months ago
2004
Springer
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...