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RECOMB
2009
Springer
14 years 11 months ago
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees
Reconciliation between a set of gene trees and a species tree is the most commonly used approach to infer the duplication and loss events in the evolution of gene families, given a...
Cedric Chauve, Nadia El-Mabrouk
SWAT
1994
Springer
86views Algorithms» more  SWAT 1994»
14 years 2 months ago
Sequential and Parallel Algorithms for Embedding Problems on Classes of Partial k-Trees
We present sequential and parallel algorithms for various embedding problems on bounded degree partial k-trees and k-connected partial k-trees these include subgraph isomorphism a...
Arvind Gupta, Naomi Nishimura
CIKM
2006
Springer
14 years 2 months ago
TRIPS and TIDES: new algorithms for tree mining
Recent research in data mining has progressed from mining frequent itemsets to more general and structured patterns like trees and graphs. In this paper, we address the problem of...
Shirish Tatikonda, Srinivasan Parthasarathy, Tahsi...
ALGORITHMICA
2008
121views more  ALGORITHMICA 2008»
13 years 10 months ago
Space Efficient Algorithms for Ordered Tree Comparison
In this paper we present techniques to significantly improve the space complexity of several ordered tree comparison algorithms without sacrificing the corresponding time complexit...
Lusheng Wang, Kaizhong Zhang
EVOW
2007
Springer
14 years 4 months ago
Combining Lagrangian Decomposition with an Evolutionary Algorithm for the Knapsack Constrained Maximum Spanning Tree Problem
We present a Lagrangian decomposition approach for the Knapsack Constrained Maximum Spanning Tree problem yielding upper bounds as well as heuristic solutions. This method is furth...
Sandro Pirkwieser, Günther R. Raidl, Jakob Pu...