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» On Compressibility of Protein Sequences
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CORR
2010
Springer
120views Education» more  CORR 2010»
13 years 5 months ago
LRM-Trees: Compressed Indices, Adaptive Sorting, and Compressed Permutations
LRM-Trees are an elegant way to partition a sequence of values into sorted consecutive blocks, and to express the relative position of the first element of each block within a prev...
Jérémy Barbay, Johannes Fischer
SPIRE
2001
Springer
14 years 2 months ago
On Compression of Parse Trees
We consider methods for compressing parse trees, especially techniques based on statistical modeling. We regard a sequence of productions corresponding to a suffix of the path fr...
Jorma Tarhio
PRICAI
2004
Springer
14 years 3 months ago
Prediction of the Risk Types of Human Papillomaviruses by Support Vector Machines
Abstract. Infection by high-risk human papillomaviruses (HPVs) is associated with the development of cervical cancers. Classification of risk types is important to understand the ...
Je-Gun Joung, Sok June Oh, Byoung-Tak Zhang
BIBE
2005
IEEE
14 years 2 days ago
A Multi-Level Approach to SCOP Fold Recognition
The classification of proteins based on their structure can play an important role in the deduction or discovery of protein function. However, the relatively low number of solved...
Keith Marsolo, Srinivasan Parthasarathy, Chris H. ...
BMCBI
2007
99views more  BMCBI 2007»
13 years 10 months ago
RepSeq - A database of amino acid repeats present in lower eukaryotic pathogens
Background: Amino acid repeat-containing proteins have a broad range of functions and their identification is of relevance to many experimental biologists. In human-infective prot...
Daniel P. Depledge, Ryan P. J. Lower, Deborah F. S...