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» On Compressibility of Protein Sequences
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CIBCB
2005
IEEE
13 years 10 months ago
Pathway Analyst--Automated Metabolic Pathway Prediction
—Metabolic pathways are crucial to our understanding of biology. The speed at which new organisms are being sequenced is outstripping our ability to experimentally determine thei...
Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu...
ALMOB
2006
80views more  ALMOB 2006»
13 years 9 months ago
Effective p-value computations using Finite Markov Chain Imbedding (FMCI): application to local score and to pattern statistics
The technique of Finite Markov Chain Imbedding (FMCI) is a classical approach to complex combinatorial problems related to sequences. In order to get efficient algorithms, it is k...
Grégory Nuel
MEDIAFORENSICS
2010
13 years 7 months ago
On the embedding capacity of DNA strands under substitution, insertion, and deletion mutations
A number of methods have been proposed over the last decade for embedding information within deoxyribonucleic acid (DNA). Since a DNA sequence is conceptually equivalent to a unid...
Félix Balado
RECOMB
2009
Springer
14 years 9 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...
RECOMB
2008
Springer
14 years 9 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...