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» On Compressibility of Protein Sequences
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BMCBI
2005
132views more  BMCBI 2005»
13 years 7 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
DCC
2002
IEEE
14 years 20 days ago
Data Compression of Correlated Non-Binary Sources Using Punctured Turbo Codes
We consider the case of two corr elated non-binary sources. Data compression is achieved by transforming the sequences of non-binary symbols into sequences of bits and then using ...
Ying Zhao, Javier Garcia-Frias
ICPADS
2008
IEEE
14 years 2 months ago
Parallel Large Scale Inference of Protein Domain Families
The resolution of combinatorial assortments of protein sequences into domains is a prerequisite for protein sequence interpretation. However the recognition and clustering of homo...
Daniel Kahn, Clément Rezvoy, Fréd&ea...
BMCBI
2010
101views more  BMCBI 2010»
13 years 7 months ago
Optimizing structural modeling for a specific protein scaffold: knottins or inhibitor cystine knots
Background: Knottins are small, diverse and stable proteins with important drug design potential. They can be classified in 30 families which cover a wide range of sequences (1621...
Jérôme Gracy, Laurent Chiche
CIBCB
2005
IEEE
14 years 1 months ago
Toward Protein Structure Analysis with Self-Organizing Maps
- Establishing structure-function relationships on the proteomic scale is a unique challenge faced by bioinformatics and molecular biosciences. Large protein families represent nat...
Lutz Hamel, Gongqin Sun, Jing Zhang