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MFCS
2009
Springer
14 years 2 months ago
Branching Programs for Tree Evaluation
We introduce the tree evaluation problem, show that it is in LogDCFL (and hence in P), and study its branching program complexity in the hope of eventually proving a superlogarith...
Mark Braverman, Stephen A. Cook, Pierre McKenzie, ...
ECCB
2008
IEEE
14 years 2 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
BMCBI
2007
95views more  BMCBI 2007»
13 years 7 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao
ESA
2008
Springer
101views Algorithms» more  ESA 2008»
13 years 9 months ago
Faster Steiner Tree Computation in Polynomial-Space
Given an n-node graph and a subset of k terminal nodes, the NP-hard Steiner tree problem is to compute a minimum-size tree which spans the terminals. All the known algorithms for t...
Fedor V. Fomin, Fabrizio Grandoni, Dieter Kratsch
CATS
2007
13 years 9 months ago
Computing a Minimum-Dilation Spanning Tree is NP-hard
Given a set S of n points in the plane, a minimumdilation spanning tree of S is a tree with vertex set S of smallest possible dilation. We show that given a set S of n points and ...
Otfried Cheong, Herman J. Haverkort, Mira Lee