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JMLR
2012
11 years 11 months ago
Active Clustering of Biological Sequences
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model...
Konstantin Voevodski, Maria-Florina Balcan, Heiko ...
BMCBI
2002
129views more  BMCBI 2002»
13 years 9 months ago
SeqHound: biological sequence and structure database as a platform for bioinformatics research
Background: SeqHound has been developed as an integrated biological sequence, taxonomy, annotation and 3-D structure database system. It provides a high-performance server platfor...
Katerina Michalickova, Gary D. Bader, Michel Dumon...
SDM
2010
SIAM
153views Data Mining» more  SDM 2010»
13 years 10 months ago
The Generalized Dimensionality Reduction Problem
The dimensionality reduction problem has been widely studied in the database literature because of its application for concise data representation in a variety of database applica...
Charu C. Aggarwal
DASFAA
2005
IEEE
136views Database» more  DASFAA 2005»
14 years 2 months ago
Indexing DNA Sequences Using q-Grams
We have observed in recent years a growing interest in similarity search on large collections of biological sequences. Contributing to the interest, this paper presents a method fo...
Xia Cao, Shuai Cheng Li, Anthony K. H. Tung
NAR
2011
189views Computer Vision» more  NAR 2011»
12 years 12 months ago
EDULISS: a small-molecule database with data-mining and pharmacophore searching capabilities
We present the relational database EDULISS (EDinburgh University Ligand Selection System), which stores structural, physicochemical and pharmacophoric properties of small molecule...
Kun-Yi Hsin, Hugh P. Morgan, Steven R. Shave, Andr...