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» On Timed Models of Gene Networks
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ICCAD
2005
IEEE
81views Hardware» more  ICCAD 2005»
14 years 4 months ago
Kauffman networks: analysis and applications
Abstract— A Kauffman network is an abstract model of gene regulatory networks. Each gene is represented by a vertex. An edge from one vertex to another implies that the former ge...
Elena Dubrova, Maxim Teslenko, Andrés Marti...
ICIC
2009
Springer
13 years 5 months ago
Inference of Differential Equation Models by Multi Expression Programming for Gene Regulatory Networks
This paper presents an evolutionary method for identifying the gene regulatory network from the observed time series data of gene expression using a system of ordinary differential...
Bin Yang, Yuehui Chen, Qingfang Meng
BMCBI
2007
154views more  BMCBI 2007»
13 years 7 months ago
h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data
Background: An ever increasing number of techniques are being used to find genes with similar profiles from microarray studies. Visualization of gene expression profiles can aid t...
Yvonne E. Pittelkow, Susan R. Wilson
BIOINFORMATICS
2002
146views more  BIOINFORMATICS 2002»
13 years 7 months ago
A duplication growth model of gene expression networks
Motivation: There has been considerable interest in developing computational techniques for inferring genetic regulatory networks from whole-genome expression profiles. When expre...
Ashish Bhan, David J. Galas, T. Gregory Dewey
PADS
2009
ACM
14 years 2 months ago
Scalable Time Warp on Blue Gene Supercomputers
Abstract—In this paper we illustrate scalable parallel performance for the Time Warp synchronization protocol on the L and P variants of the IBM Blue Gene supercomputer. Scalable...
David W. Bauer, Christopher D. Carothers, Akintayo...