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» On genomic coding theory
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NAR
2006
142views more  NAR 2006»
13 years 7 months ago
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes
Recent work has demonstrated that microRNAs (miRNAs) are involved in critical biological processes by suppressing the translation of coding genes. This work develops an integrated...
Paul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li...
BMCBI
2006
68views more  BMCBI 2006»
13 years 7 months ago
Detecting overlapping coding sequences in virus genomes
Background: Detecting new coding sequences (CDSs) in viral genomes can be difficult for several reasons. The typically compact genomes often contain a number of overlapping coding...
Andrew E. Firth, Chris M. Brown
ISMB
1996
13 years 9 months ago
Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model
We have developed a hidden Markov model (HMM)to detect the protein coding regions within one megabase contiguous sequence data, registered in a database called GenBankin eight ent...
Tetsushi Yada, Makoto Hirosawa
BMCBI
2010
172views more  BMCBI 2010»
13 years 7 months ago
Accessing the SEED genome databases via Web services API: tools for programmers
Background: The SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems ...
Terry Disz, Sajia Akhter, Daniel Cuevas, Robert Ol...
APBC
2004
13 years 9 months ago
A Rapid Method of Whole Genome Visualisation Illustrating Features in Both Coding and Non-coding Regions
The application of Fourier analysis to a genome can be used as an indicator of gene coding regions. We have developed a visualisation of the Fourier spectra that allows convenient...
Ross Hall, Linda Stern