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BIOCOMP
2010
13 years 4 months ago
Using the Genetic Code Wisdom for Recognizing Protein Coding Sequences
We have elaborated a new method of recognizing protein coding sequences in genomic sequences. The method is exploiting a specific way of genetic code degeneration and relations bet...
Pawel Blazej, Pawel Mackiewicz, Stanislaw Cebrat
BMCBI
2007
113views more  BMCBI 2007»
13 years 7 months ago
Statistical power of phylo-HMM for evolutionarily conserved element detection
Background: An important goal of comparative genomics is the identification of functional elements through conservation analysis. Phylo-HMM was recently introduced to detect conse...
Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu
CSB
2003
IEEE
111views Bioinformatics» more  CSB 2003»
14 years 29 days ago
A Block Coding Method that Leads to Significantly Lower Entropy Values for the Proteins and Coding Sections of Haemophilus influ
A simple statistical block code in combination with the LZW-based compression utilities gzip and compress has been found to increase by a significant amount the level of compressi...
G. Sampath
CORR
2006
Springer
132views Education» more  CORR 2006»
13 years 7 months ago
A Decomposition Theory for Binary Linear Codes
The decomposition theory of matroids initiated by Paul Seymour in the 1980's has had an enormous impact on research in matroid theory. This theory, when applied to matrices ov...
Navin Kashyap
BMCBI
2007
116views more  BMCBI 2007»
13 years 7 months ago
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
Background: Despite a remarkable success in the computational prediction of genes in Bacteria and Archaea, a lack of comprehensive understanding of prokaryotic gene structures pre...
Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, ...