Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...
— We present heuristic algorithms for pruning large sets of candidate paths or trajectories down to smaller subsets that maintain desirable characteristics in terms of overall re...
Michael S. Branicky, Ross A. Knepper, James J. Kuf...
Suppose that each vertex of a graph G is either a supply vertex or a demand vertex and is assigned a positive real number, called the supply or the demand. Each demand vertex can ...
Takehiro Ito, Erik D. Demaine, Xiao Zhou, Takao Ni...
This paper studies the “explanation problem” for tree- and linearly-ordered array data, a problem motivated by database applications and recently solved for the one-dimensiona...
Howard J. Karloff, Flip Korn, Konstantin Makaryche...
We consider the problem of finding efficient trees to send information from k sources to a single sink in a network where information can be aggregated at intermediate nodes in t...