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    BMCBI
    2008
    115views more  BMCBI 2008»
    Probe signal correction for differential methylation hybridization experiments
    13 years 8 months ago
    Probe signal correction for differential methylation hybridization experiments
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    Background: Non-biological signal (or noise) has been the bane of microarray analysis. Hybridization effects related to probe-sequence composition and DNA dye-probe interactions h...
    Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang,...
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    BMCBI
    2007
    167views more  BMCBI 2007»
    A stochastic differential equation model for transcriptional regulatory networks
    13 years 8 months ago
    A stochastic differential equation model for transcriptional regulatory networks
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    Background: This work explores the quantitative characteristics of the local transcriptional regulatory network based on the availability of time dependent gene expression data se...
    Adriana Climescu-Haulica, Michelle D. Quirk
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    BMCBI
    2007
    164views more  BMCBI 2007»
    SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
    13 years 8 months ago
    SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
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    Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
    Fathi Elloumi, Martha Nason
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    BMCBI
    2002
    89views more  BMCBI 2002»
    Sources of variability and effect of experimental approach on expression profiling data interpretation
    13 years 8 months ago
    Sources of variability and effect of experimental approach on expression profiling data interpretation
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    Background: We provide a systematic study of the sources of variability in expression profiling data using 56 RNAs isolated from human muscle biopsies (34 Affymetrix MuscleChip ar...
    Marina Bakay, Yi-Wen Chen, Rehannah H. A. Borup, P...
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    BMCBI
    2007
    148views more  BMCBI 2007»
    Evaluation of gene-expression clustering via mutual information distance measure
    13 years 8 months ago
    Evaluation of gene-expression clustering via mutual information distance measure
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    Background: The definition of a distance measure plays a key role in the evaluation of different clustering solutions of gene expression profiles. In this empirical study we compa...
    Ido Priness, Oded Maimon, Irad E. Ben-Gal
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