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BMCBI
2010
142views more  BMCBI 2010»
15 years 2 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
ER
2004
Springer
161views Database» more  ER 2004»
15 years 7 months ago
Towards a Statistically Semantic Web
The envisioned Semantic Web aims to provide richly annotated and explicitly structured Web pages in XML, RDF, or description logics, based upon underlying ontologies and thesauri. ...
Gerhard Weikum, Jens Graupmann, Ralf Schenkel, Mar...
ESANN
2007
15 years 3 months ago
Order in Complex Systems of Nonlinear Oscillators: Phase Locked Subspaces
Any order parameter quantifying the degree of organisation in a physical system can be studied in connection to source extraction algorithms. Independent component analysis (ICA) b...
Jan-Hendrik Schleimer, Ricardo Vigário
NAR
2011
305views Computer Vision» more  NAR 2011»
14 years 5 months ago
CDD: a Conserved Domain Database for the functional annotation of proteins
NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from...
Aron Marchler-Bauer, Shennan Lu, John B. Anderson,...
RECOMB
2010
Springer
15 years 23 days ago
Predicting Nucleosome Positioning Using Multiple Evidence Tracks
Abstract. We describe a probabilistic model, implemented as a dynamic Bayesian network, that can be used to predict nucleosome positioning along a chromosome based on one or more g...
Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, ...