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    BMCBI
    2006
    78views more  BMCBI 2006»
    Subfamily logos: visualization of sequence deviations at alignment positions with high information content
    13 years 10 months ago
    Subfamily logos: visualization of sequence deviations at alignment positions with high information content
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    Background: Recognition of relevant sequence deviations can be valuable for elucidating functional differences between protein subfamilies. Interesting residues at highly conserve...
    Eric Beitz
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    BMCBI
    2006
    113views more  BMCBI 2006»
    QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyp
    13 years 10 months ago
    QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyp
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    Background: Single nucleotide polymorphisms (SNPs) are important tools in studying complex genetic traits and genome evolution. Computational strategies for SNP discovery make use...
    Jifeng Tang, Ben Vosman, Roeland E. Voorrips, C. G...
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    BMCBI
    2006
    124views more  BMCBI 2006»
    The development and validation of the Virtual Tissue Matrix, a software application that facilitates the review of tissue microa
    13 years 10 months ago
    The development and validation of the Virtual Tissue Matrix, a software application that facilitates the review of tissue microa
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    Background: The Tissue Microarray (TMA) facilitates high-throughput analysis of hundreds of tissue specimens simultaneously. However, bottlenecks in the storage and manipulation o...
    Catherine M. Conway, Deirdre O'Shea, Sallyann O'Br...
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    BMCBI
    2006
    93views more  BMCBI 2006»
    A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
    13 years 10 months ago
    A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
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    Background: Many of the most popular pre-processing methods for Affymetrix expression arrays, such as RMA, gcRMA, and PLIER, simultaneously analyze data across a set of predetermi...
    Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Trip...
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    BMCBI
    2007
    112views more  BMCBI 2007»
    Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
    13 years 9 months ago
    Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
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    Background: Gene clustering has been widely used to group genes with similar expression pattern in microarray data analysis. Subsequent enrichment analysis using predefined gene s...
    Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong ...
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