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» Ontology Similarity in the Alignment Space
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BMCBI
2007
120views more  BMCBI 2007»
13 years 7 months ago
Quantitative sequence-function relationships in proteins based on gene ontology
Background: The relationship between divergence of amino-acid sequence and divergence of function among homologous proteins is complex. The assumption that homologs share function...
Vineet Sangar, Daniel J. Blankenberg, Naomi Altman...
SEMWEB
2007
Springer
14 years 1 months ago
An Empirical Study of Instance-Based Ontology Matching
Instance-based ontology mapping is a promising family of solutions to a class of ontology alignment problems. It crucially depends on measuring the similarity between sets of annot...
Antoine Isaac, Lourens van der Meij, Stefan Schlob...
FOIS
2001
13 years 9 months ago
A note on proximity spaces and connection based mereology
-- Representation theorems for systems of regions have been of interest for some time, and various contexts have been used for this purpose: Mormann [17] has demonstrated the fruit...
Dimiter Vakarelov, Ivo Düntsch, Brandon Benne...
BMCBI
2010
106views more  BMCBI 2010»
13 years 7 months ago
Multiple structure alignment and consensus identification for proteins
Background: An algorithm is presented to compute a multiple structure alignment for a set of proteins and to generate a consensus (pseudo) protein which captures common substructu...
Ivaylo Ilinkin, Jieping Ye, Ravi Janardan
ISAAC
2004
Springer
125views Algorithms» more  ISAAC 2004»
14 years 1 months ago
Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs
RNA molecules whose secondary structures contain similar substructures often have similar functions. Therefore, an important task in the study of RNA is to develop methods for disc...
Jesper Jansson, Ngo Trung Hieu, Wing-Kin Sung