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» Ontology-based Knowledge Representation for Bioinformatics
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JMLR
2006
112views more  JMLR 2006»
13 years 7 months ago
Kernels on Prolog Proof Trees: Statistical Learning in the ILP Setting
We develop kernels for measuring the similarity between relational instances using background knowledge expressed in first-order logic. The method allows us to bridge the gap betw...
Andrea Passerini, Paolo Frasconi, Luc De Raedt
BIB
2006
169views more  BIB 2006»
13 years 7 months ago
Bio-ontologies: current trends and future directions
: In recent years, as a knowledge-based discipline, bioinformatics has moved to make its knowledge more computationally amenable. After its beginnings in the disciplines as a techn...
Olivier Bodenreider, Robert Stevens
BMCBI
2008
106views more  BMCBI 2008»
13 years 7 months ago
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
Background: Bio-ontologies are key elements of knowledge management in bioinformatics. Rich and rigorous bio-ontologies should represent biological knowledge with high fidelity an...
Mikel Egaña Aranguren, Erick Antezana, Mart...
DILS
2005
Springer
14 years 1 months ago
Support for BioIndexing in BLASTgres
The ability to perform genome-wide and cross-genome data analyses can dramatically reduce the time required for new biological discoveries. This raises important issues in bioinfor...
Ruey-Lung Hsiao, Douglas Stott Parker Jr., Hung-ch...
EDBT
2004
ACM
230views Database» more  EDBT 2004»
14 years 7 months ago
Flexible Integration of Molecular-Biological Annotation Data: The GenMapper Approach
Molecular-biological annotation data is continuously being collected, curated and made accessible in numerous public data sources. Integration of this data is a major challenge in ...
Hong Hai Do, Erhard Rahm