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» Optimal Conclusive Sets for Comparator Networks
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BMCBI
2008
152views more  BMCBI 2008»
13 years 9 months ago
Predicting biological system objectives de novo from internal state measurements
Background: Optimization theory has been applied to complex biological systems to interrogate network properties and develop and refine metabolic engineering strategies. For examp...
Erwin P. Gianchandani, Matthew A. Oberhardt, Antho...
BMCBI
2010
109views more  BMCBI 2010»
13 years 9 months ago
Functional characterization and topological modularity of molecular interaction networks
Background: Analyzing interaction networks for functional characterization poses significant challenges arising from the noisy, incomplete, and generic nature of both the interact...
Jayesh Pandey, Mehmet Koyutürk, Ananth Grama
BMCBI
2007
153views more  BMCBI 2007»
13 years 9 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...
CIDM
2009
IEEE
14 years 3 months ago
Ensemble member selection using multi-objective optimization
— Both theory and a wealth of empirical studies have established that ensembles are more accurate than single predictive models. Unfortunately, the problem of how to maximize ens...
Tuve Löfström, Ulf Johansson, Henrik Bos...
QUESTA
2010
131views more  QUESTA 2010»
13 years 7 months ago
Asymptotically optimal parallel resource assignment with interference
Motivated by scheduling in cellular wireless networks and resource allocation in computer systems, we study a service facility with two classes of users having heterogeneous servi...
Maaike Verloop, R. Núñez Queija