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BMCBI
2007
110views more  BMCBI 2007»
13 years 7 months ago
Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy
Background: The design of long oligonucleotides for spotted DNA microarrays requires detailed attention to ensure their optimal performance in the hybridization process. The main ...
Guangan Hu, Manuel Llinás, Jingguang Li, Pe...
BMCBI
2004
96views more  BMCBI 2004»
13 years 7 months ago
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides
Background: Computer programs for the generation of multiple sequence alignments such as "Clustal W" allow detection of regions that are most conserved among many sequen...
Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemt...
KDD
2007
ACM
201views Data Mining» more  KDD 2007»
14 years 8 months ago
Structural and temporal analysis of the blogosphere through community factorization
The blogosphere has unique structural and temporal properties since blogs are typically used as communication media among human individuals. In this paper, we propose a novel tech...
Yun Chi, Shenghuo Zhu, Xiaodan Song, Jun'ichi Tate...
RECOMB
2004
Springer
14 years 8 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
PPOPP
2010
ACM
14 years 5 months ago
The LOFAR correlator: implementation and performance analysis
LOFAR is the first of a new generation of radio telescopes. Rather than using expensive dishes, it forms a distributed sensor network that combines the signals from many thousands...
John W. Romein, P. Chris Broekema, Jan David Mol, ...