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BMCBI
2007
144views more  BMCBI 2007»
13 years 10 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
SIAMCOMP
2012
12 years 9 days ago
An Optimal Dynamic Data Structure for Stabbing-Semigroup Queries
Let S be a set of n intervals in R, and let (S, +) be any commutative semigroup. We assign a weight ω(s) ∈ S to each interval in S. For a point x ∈ R, let S(x) ⊆ S be the se...
Pankaj K. Agarwal, Lars Arge, Haim Kaplan, Eyal Mo...
ICML
2006
IEEE
14 years 10 months ago
Convex optimization techniques for fitting sparse Gaussian graphical models
We consider the problem of fitting a large-scale covariance matrix to multivariate Gaussian data in such a way that the inverse is sparse, thus providing model selection. Beginnin...
Onureena Banerjee, Laurent El Ghaoui, Alexandre d'...
SARA
2007
Springer
14 years 4 months ago
A Meta-CSP Model for Optimal Planning
One approach to optimal planning is to first start with a sub- optimal solution as a seed plan, and then iteratively search for shorter plans. This approach inevitably leads to an...
Peter Gregory, Derek Long, Maria Fox
ICS
2009
Tsinghua U.
14 years 4 months ago
Performance modeling and automatic ghost zone optimization for iterative stencil loops on GPUs
Iterative stencil loops (ISLs) are used in many applications and tiling is a well-known technique to localize their computation. When ISLs are tiled across a parallel architecture...
Jiayuan Meng, Kevin Skadron