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BMCBI
2008
103views more  BMCBI 2008»
13 years 7 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
BMCBI
2008
105views more  BMCBI 2008»
13 years 7 months ago
A gene pattern mining algorithm using interchangeable gene sets for prokaryotes
Background: Mining gene patterns that are common to multiple genomes is an important biological problem, which can lead us to novel biological insights. When family classification...
Meng Hu, Kwangmin Choi, Wei Su, Sun Kim, Jiong Yan...
BMCBI
2007
180views more  BMCBI 2007»
13 years 7 months ago
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
Background: The Affymetrix™ technology is nowadays a well-established method for the analysis of gene expression profiles in cancer research studies. However, changes in gene ex...
Davide Rambaldi, Barbara Felice, Viviane Praz, Phi...
JOT
2008
119views more  JOT 2008»
13 years 7 months ago
Revisiting Class Cohesion: An empirical investigation on several systems
Class cohesion is considered as one of most important object-oriented software attributes. Cohesion refers to the degree of relatedness between members in a class. High cohesion i...
Linda Badri, Mourad Badri, Alioune Badara Gueye
TCS
2008
13 years 7 months ago
Algorithms for computing variants of the longest common subsequence problem
The longest common subsequence(LCS) problem is one of the classical and wellstudied problems in computer science. The computation of the LCS is a frequent task in DNA sequence ana...
Costas S. Iliopoulos, M. Sohel Rahman