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BIOCOMP
2008
13 years 8 months ago
Bioinformatics Tools: Searching for Markers in DNA/RNA Sequences
Research in bioinformatics and computational biology relies heavily on algorithms that facilitate the understanding of biological processes through the application of statistical ...
Kuha Mahalingam, Omar Bagasra
IPPS
2008
IEEE
14 years 1 months ago
Performance characterization and optimization of parallel I/O on the Cray XT
This paper presents an extensive characterization, tuning, and optimization of parallel I/O on the Cray XT supercomputer, named Jaguar, at Oak Ridge National Laboratory. We have c...
Weikuan Yu, Jeffrey S. Vetter, Sarp Oral
IPPS
1999
IEEE
13 years 11 months ago
Infrastructure for Building Parallel Database Systems for Multi-Dimensional Data
Our study of a large set of scientific applications over the past three years indicates that the processing for multidimensional datasets is often highly stylized. The basic proce...
Chialin Chang, Renato Ferreira, Alan Sussman, Joel...
ASAP
2009
IEEE
131views Hardware» more  ASAP 2009»
14 years 13 days ago
Constraint-Driven Instructions Selection and Application Scheduling in the DURASE system
This paper presents a new constraint-driven method for computational pattern selection, mapping and application scheduling using reconfigurable processor extensions. The presente...
Kevin Martin, Christophe Wolinski, Krzysztof Kuchc...
ESCIENCE
2006
IEEE
14 years 1 months ago
Communication over a Secured Heterogeneous Grid with the GriddLeS Runtime Environment
Scientific workflows are a powerful programming technique for specifying complex computations using a number of otherwise independent components. When used in a Grid environment, ...
Jagan Kommineni, David Abramson, Jefferson Tan