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150
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ICCS
2009
Springer
15 years 10 months ago
A Scalable and Adaptable Solution Framework within Components of the Community Climate System Model
Abstract. A framework for a fully implicit solution method is implemented into (1) the High Order Methods Modeling Environment (HOMME), which is a spectral element dynamical core o...
Katherine J. Evans, Damian W. I. Rouson, Andrew G....
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 10 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
182
Voted
FPL
2010
Springer
188views Hardware» more  FPL 2010»
15 years 1 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
127
Voted
ISCA
2007
IEEE
145views Hardware» more  ISCA 2007»
15 years 10 months ago
Mechanisms for store-wait-free multiprocessors
Store misses cause significant delays in shared-memory multiprocessors because of limited store buffering and ordering constraints required for proper synchronization. Today, prog...
Thomas F. Wenisch, Anastassia Ailamaki, Babak Fals...
143
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CF
2010
ACM
15 years 9 months ago
Interval-based models for run-time DVFS orchestration in superscalar processors
We develop two simple interval-based models for dynamic superscalar processors. These models allow us to: i) predict with great accuracy performance and power consumption under va...
Georgios Keramidas, Vasileios Spiliopoulos, Stefan...