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124
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ICFP
2008
ACM
16 years 2 months ago
A scheduling framework for general-purpose parallel languages
The trend in microprocessor design toward multicore and manycore processors means that future performance gains in software will largely come from harnessing parallelism. To reali...
Matthew Fluet, Mike Rainey, John H. Reppy
IPPS
2009
IEEE
15 years 9 months ago
Predictive analysis and optimisation of pipelined wavefront computations
Pipelined wavefront computations are a ubiquitous class of parallel algorithm used for the solution of a num­ ber of scientific and engineering applications. This paper investig...
Gihan R. Mudalige, Simon D. Hammond, J. A. Smith, ...
ISMB
1996
15 years 3 months ago
The Megaprior Heuristic for Discovering Protein Sequence Patterns
Several computeralgorithms for discovering patterns in groups of protein sequences are in use that are basedon fitting the parametersof a statistical model to a group of related s...
Timothy L. Bailey, Michael Gribskov
RECOMB
2004
Springer
16 years 2 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
123
Voted
ICASSP
2010
IEEE
15 years 2 months ago
Partial sequence matching using an Unbounded Dynamic Time Warping algorithm
Before the advent of Hidden Markov Models(HMM)-based speech recognition, many speech applications were built using pattern matching algorithms like the Dynamic Time Warping (DTW) ...
Xavier Anguera, Robert Macrae, Nuria Oliver