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SASP
2009
IEEE
291views Hardware» more  SASP 2009»
15 years 9 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
120
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BMCBI
2010
142views more  BMCBI 2010»
15 years 2 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
BMCBI
2010
132views more  BMCBI 2010»
15 years 2 months ago
Parallel multiplicity and error discovery rate (EDR) in microarray experiments
Background: In microarray gene expression profiling experiments, differentially expressed genes (DEGs) are detected from among tens of thousands of genes on an array using statist...
Wayne Wenzhong Xu, Clay J. Carter
NAR
2011
212views Computer Vision» more  NAR 2011»
14 years 5 months ago
Phospho.ELM: a database of phosphorylation sites - update 2011
The Phospho.ELM resource (http://phospho.elm.eu .org) is a relational database designed to store in vivo and in vitro phosphorylation data extracted from the scientific literature...
Holger Dinkel, Claudia Chica, Allegra Via, Cathryn...
125
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IEEEPACT
1998
IEEE
15 years 6 months ago
Dynamic Hammock Predication for Non-Predicated Instruction Set Architectures
Conventional speculative architectures use branch prediction to evaluate the most likely execution path during program execution. However, certain branches are difficult to predic...
Artur Klauser, Todd M. Austin, Dirk Grunwald, Brad...