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BMCBI
2010
153views more  BMCBI 2010»
13 years 7 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
ISBI
2008
IEEE
14 years 8 months ago
Pathological image segmentation for neuroblastoma using the GPU
We present a novel use of GPUs (Graphics Processing Units) for the analysis of histopathologicalimages of neuroblastoma, a childhood cancer. Thanks to the advent of modern microsc...
Antonio Ruiz, Jun Kong, Manuel Ujaldon, Kim L. Boy...
HIPC
2009
Springer
13 years 5 months ago
Integrating and optimizing transactional memory in a data mining middleware
As the size of available datasets in various domains is growing rapidly, there is an increasing need for scaling data mining implementations. Coupled with the current trends in co...
Vignesh T. Ravi, Gagan Agrawal
HPDC
2009
IEEE
14 years 2 months ago
Maintaining reference graphs of globally accessible objects in fully decentralized distributed systems
Since the advent of electronic computing, the processors’ clock speed has risen tremendously. Now that energy efficiency requirements have stopped that trend, the number of proc...
Björn Saballus, Thomas Fuhrmann
ASPLOS
2009
ACM
14 years 8 months ago
StreamRay: a stream filtering architecture for coherent ray tracing
The wide availability of commodity graphics processors has made real-time graphics an intrinsic component of the human/computer interface. These graphics cores accelerate the z-bu...
Karthik Ramani, Christiaan P. Gribble, Al Davis