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» Parallelizing HMMER for Hardware Acceleration on FPGAs
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HIPEAC
2010
Springer
13 years 12 months ago
Accelerating XML Query Matching through Custom Stack Generation on FPGAs
Abstract. Publish-subscribe systems present the state of the art in information dissemination to multiple users. Such systems have evolved from simple topic-based to the current XM...
Roger Moussalli, Mariam Salloum, Walid A. Najjar, ...
BMCBI
2008
214views more  BMCBI 2008»
13 years 8 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
ASAP
2008
IEEE
146views Hardware» more  ASAP 2008»
14 years 2 months ago
A multi-FPGA application-specific architecture for accelerating a floating point Fourier Integral Operator
Many complex systems require the use of floating point arithmetic that is exceedingly time consuming to perform on personal computers. However, floating point operators are also h...
Jason Lee, Lesley Shannon, Matthew J. Yedlin, Gary...
ERSA
2004
130views Hardware» more  ERSA 2004»
13 years 9 months ago
Computing Lennard-Jones Potentials and Forces with Reconfigurable Hardware
Abstract-- Technological advances have made FPGAs an attractive platform for the acceleration of complex scientific applications. These applications demand high performance and hig...
Ronald Scrofano, Viktor K. Prasanna
ICDE
2010
IEEE
248views Database» more  ICDE 2010»
14 years 7 months ago
FPGA Acceleration for the Frequent Item Problem
Abstract-- Field-programmable gate arrays (FPGAs) can provide performance advantages with a lower resource consumption (e.g., energy) than conventional CPUs. In this paper, we show...
Gustavo Alonso, Jens Teubner, René Mül...