183 search results - page 2 / 37 » Pathway Logic: Executable Models of Biological Networks |
ILP
2005
Springer
14 years 4 months ago
2005
Springer
In this paper we survey work being conducted at Imperial College on the use of machine learning to build Systems Biology models of the effects of toxins on biochemical pathways. Se...
CMSB
2004
Springer
14 years 4 months ago
2004
Springer
In this paper we present a methodology to estimate rates of enzymatic reactions in metabolic pathways. Our methodology is based on applying stochastic logic learning in ensemble le...
BIOCOMP
2006
14 years 8 days ago
2006
Intracellular signaling pathways as well as the interactions and coordination that exist among them are complex and difficult to visualize and understand. Computer-based models of...
RECOMB
2009
Springer
14 years 11 months ago
2009
Springer
Abstract. Between-Pathway Models (BPMs) are network motifs consisting of pairs of putative redundant pathways. In this paper, we show how adding another source of high-throughput d...
CISIS
2009
IEEE
14 years 5 months ago
2009
IEEE
—This paper describes a new logic-based approach for representing and reasoning about metabolic networks. First it shows how biological pathways can be elegantly represented in a...