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» Performance Analysis of Sequence Alignment Applications
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BMCBI
2007
120views more  BMCBI 2007»
13 years 9 months ago
Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
Background: When aligning several hundreds or thousands of sequences, such as epidemic virus sequences or homologous/orthologous sequences of some big gene families, to reconstruc...
Arthur Chun-Chieh Shih, D. T. Lee, Chin-Lin Peng, ...
GECCO
2004
Springer
137views Optimization» more  GECCO 2004»
14 years 2 months ago
Evolving Better Multiple Sequence Alignments
Aligning multiple DNA or protein sequences is a fundamental step in the analyses of phylogeny, homology and molecular structure. Heuristic algorithms are applied because optimal mu...
Luke Sheneman, James A. Foster
BMCBI
2011
13 years 23 days ago
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing
Background: Next-generation sequencing (NGS) offers a unique opportunity for high-throughput genomics and has potential to replace Sanger sequencing in many fields, including de-n...
Mattia C. F. Prosperi, Luciano Prosperi, Alessandr...
CIARP
2006
Springer
14 years 27 days ago
Alignment of Paragraphs in Bilingual Texts Using Bilingual Dictionaries and Dynamic Programming
Parallel text alignment is a special type of pattern recognition task aimed to discover the similarity between two sequences of symbols. Given the same text in two different langua...
Alexander F. Gelbukh, Grigori Sidorov
BMCBI
2004
200views more  BMCBI 2004»
13 years 9 months ago
ABC: software for interactive browsing of genomic multiple sequence alignment data
Background: Alignment and comparison of related genome sequences is a powerful method to identify regions likely to contain functional elements. Such analyses are data intensive, ...
Gregory M. Cooper, Senthil A. G. Singaravelu, Aren...