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141views
12 years 8 months ago
Measures of Diversity for Populations and Distances Between Individuals with Highly Reorganizable Genomes
In this paper we address the problem of defining a measure of diversity for a population of individuals whose genome can be subjected to major reorganizations during the evolution...
Claudio Mattiussi, Markus Waibel, Dario Floreano
CCS
2009
ACM
14 years 5 months ago
Privacy-preserving genomic computation through program specialization
In this paper, we present a new approach to performing important classes of genomic computations (e.g., search for homologous genes) that makes a significant step towards privacy...
Rui Wang, XiaoFeng Wang, Zhou Li, Haixu Tang, Mich...
GECCO
2010
Springer
172views Optimization» more  GECCO 2010»
14 years 3 months ago
Designing better fitness functions for automated program repair
Evolutionary methods have been used to repair programs automatically, with promising results. However, the fitness function used to achieve these results was based on a few simpl...
Ethan Fast, Claire Le Goues, Stephanie Forrest, We...
BMCBI
2002
109views more  BMCBI 2002»
13 years 10 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue
RTA
2007
Springer
14 years 4 months ago
Rewriting Approximations for Fast Prototyping of Static Analyzers
This paper shows how to construct static analyzers using tree automata and rewriting techniques. Starting from a term rewriting system representing the operational semantics of the...
Yohan Boichut, Thomas Genet, Thomas P. Jensen, Luk...