We elaborate upon the usage of action language C for representing and reasoning about biological models. First, we provide a simple extension of C allowing for variables and show ...
LabFlowis a workflowmanagementsystem designed for large scale biologyresearch laboratories. It providesa workflowmodelin whichobjects flowfromtask to task under programmaticcontro...
Background: A mathematical model to understand, predict, control, or even design a real biological system is a central theme in systems biology. A dynamic biological system is alw...
We apply the multi-agent system (MAS) platform to the task of biological network simulation. In this paper, we describe the simulation of signal transduction (ST) networks using t...
Salim Khan, Ravi Makkena, Foster McGeary, Keith S....
Background: In systems biology, and many other areas of research, there is a need for the interoperability of tools and data sources that were not originally designed to be integr...
John Boyle, Christopher C. Cavnor, Sarah A. Killco...