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» Petri nets for modelling metabolic pathways: a survey
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CMSB
2009
Springer
14 years 1 months ago
On the Use of Stochastic Petri Nets in the Analysis of Signal Transduction Pathways for Angiogenesis Process
In this paper we consider the modeling of a selected portion of signal transduction events involved in the angiogenesis process. The detailed model of this process contains a large...
Lucia Napione, Daniele Manini, Francesca Cordero, ...
APBC
2004
122views Bioinformatics» more  APBC 2004»
13 years 11 months ago
Integrating Biopathway Databases for Large-scale Modeling and Simulation
Biopathway databases have been developed, such as KEGG and EcoCyc, that compile interaction structures of biopathways together with biological annotations. However, these biopathw...
Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Sato...
GECCO
2004
Springer
150views Optimization» more  GECCO 2004»
14 years 3 months ago
Systems Biology Modeling in Human Genetics Using Petri Nets and Grammatical Evolution
Understanding the hierarchical relationships among biochemical, metabolic, and physiological systems in the mapping between genotype and phenotype is expected to improve the diagno...
Jason H. Moore, Lance W. Hahn
AIME
2009
Springer
13 years 11 months ago
Semantic Web-Based Modeling of Clinical Pathways Using the UML Activity Diagrams and OWL-S
: Clinical Pathways can be viewed as workflows, comprising an ordering of activities with associated execution constraints. Workflow models allow formal representation, analysis an...
Ali Daniyal, Syed Sibte Raza Abidi
MASCOTS
2003
13 years 11 months ago
Software Performance Modeling Using UML and Petri Nets
Abstract. Software systems are today one of the most complex artifacts, they are simultaneously used by hundred-thousand of people sometimes in risk real time operations, such as a...
José Merseguer, Javier Campos