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RECOMB
2006
Springer
16 years 4 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2004
Springer
16 years 4 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
STOC
2003
ACM
188views Algorithms» more  STOC 2003»
16 years 4 months ago
Almost random graphs with simple hash functions
We describe a simple randomized construction for generating pairs of hash functions h1, h2 from a universe U to ranges V = [m] = {0, 1, . . . , m - 1} and W = [m] so that for ever...
Martin Dietzfelbinger, Philipp Woelfel
STOC
2002
ACM
112views Algorithms» more  STOC 2002»
16 years 4 months ago
Wait-free consensus with infinite arrivals
A randomized algorithm is given that solves the wait-free consensus problem for a shared-memory model with infinitely many processes. The algorithm is based on a weak shared coin ...
James Aspnes, Gauri Shah, Jatin Shah
STACS
2009
Springer
15 years 11 months ago
Approximating Acyclicity Parameters of Sparse Hypergraphs
The notions of hypertree width and generalized hypertree width were introduced by Gottlob, Leone, and Scarcello in order to extend the concept of hypergraph acyclicity. These noti...
Fedor V. Fomin, Petr A. Golovach, Dimitrios M. Thi...