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BMCBI
2008
163views more  BMCBI 2008»
13 years 10 months ago
Gene Ontology term overlap as a measure of gene functional similarity
Background: The availability of various high-throughput experimental and computational methods allows biologists to rapidly infer functional relationships between genes. It is oft...
Meeta Mistry, Paul Pavlidis
BMCBI
2007
97views more  BMCBI 2007»
13 years 10 months ago
Relating destabilizing regions to known functional sites in proteins
Background: Most methods for predicting functional sites in protein 3D structures, rely on information on related proteins and cannot be applied to proteins with no known relative...
Benoit H. Dessailly, Marc F. Lensink, Shoshana J. ...
FGCS
2006
74views more  FGCS 2006»
13 years 10 months ago
A performance model of non-deterministic particle transport on large-scale systems
In this work we present a predictive analytical model that encompasses the performance and scaling characteristics of a nondeterministic particle transport application, MCNP (Mont...
Mark M. Mathis, Darren J. Kerbyson, Adolfy Hoisie
IJNSEC
2008
127views more  IJNSEC 2008»
13 years 10 months ago
Inter-domain Routing Stability Dynamics During Infrastructure Stress Events: The Internet Worm Menace
The Internet is crucial to business, government, education and many other facets of society and its continuing scalability places serious challenges on the routing system's c...
Francesco Palmieri
JCSS
2008
81views more  JCSS 2008»
13 years 10 months ago
A simulator for adaptive parallel applications
Dynamically allocating computing nodes to parallel applications is a promising technique for improving the utilization of cluster resources. Detailed simulations can help identify...
Basile Schaeli, Sebastian Gerlach, Roger D. Hersch