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JCB
2007
97views more  JCB 2007»
13 years 9 months ago
Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications
Accurate prediction of pseudoknotted nucleic acid secondary structure is an important computational challenge. Prediction algorithms based on dynamic programming aim to find a st...
Baharak Rastegari, Anne Condon
CCE
2004
13 years 9 months ago
Continuous reformulations of discrete-continuous optimization problems
This paper treats the solution of nonlinear optimization problems involving discrete decision variables, also known as generalized disjunctive programming (GDP) or mixed-integer n...
Oliver Stein, Jan Oldenburg, Wolfgang Marquardt
PDPTA
2010
13 years 7 months ago
Data-Parallelism and GPUs for Lattice Gas Fluid Simulations
Lattice gas cellular automata (LGCA) models provide a relatively fast means of simulating fluid flow and can give both quantitative and qualitative insights into flow patterns aro...
Mitchel Johnson, Daniel P. Playne, Kenneth A. Hawi...
IFIP
2010
Springer
13 years 4 months ago
Resource Adaptive Distributed Information Sharing
We have designed, implemented and evaluated a resource adaptive distributed information sharing system where automatic adjustments are made internally in our information sharing sy...
Hans Vatne Hansen, Vera Goebel, Thomas Plagemann, ...
BMCBI
2007
136views more  BMCBI 2007»
13 years 10 months ago
Comparison of protein structures by growing neighborhood alignments
Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...