We present design and implementation details as well as performance results for two new parallel checkpointing libraries developed by us for parallel MPI applications. The first o...
High-accuracy PDE solvers use multi-dimensional fast Fourier transforms. The FFTs exhibits a static and structured memory access pattern which results in a large amount of communic...
Modern reconfigurable computing systems feature powerful hybrid architectures with multiple microprocessor cores, large reconfigurable logic arrays and distributed memory hierarch...
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Commodity hardware and software are growing increasingly more complex, with advances such as chip heterogeneity and specialization, deeper memory hierarchies, ne-grained power ma...