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BMCBI
2007
124views more  BMCBI 2007»
13 years 8 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...
BMCBI
2007
106views more  BMCBI 2007»
13 years 8 months ago
Simultaneous identification of long similar substrings in large sets of sequences
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Jürgen Kleffe, Friedrich Möller, Burghar...
IJHPCA
2008
131views more  IJHPCA 2008»
13 years 8 months ago
De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
We present a de novo hierarchical simulation framework for first-principles based predictive simulations of materials and their validation on high-end parallel supercomputers and ...
Aiichiro Nakano, Rajiv K. Kalia, Ken-ichi Nomura, ...
GRID
2006
Springer
13 years 8 months ago
Resource Allocation in Streaming Environments
This paper considers resource allocation algorithms for processing streams of events on computational grids. For example, financial trading applications are executed on large comp...
Lu Tian, K. Mani Chandy
ISCA
2006
IEEE
144views Hardware» more  ISCA 2006»
13 years 8 months ago
Conditional Memory Ordering
Conventional relaxed memory ordering techniques follow a proactive model: at a synchronization point, a processor makes its own updates to memory available to other processors by ...
Christoph von Praun, Harold W. Cain, Jong-Deok Cho...
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