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» Protein Model Representation and Construction
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BMCBI
2006
159views more  BMCBI 2006»
13 years 8 months ago
EVEREST: automatic identification and classification of protein domains in all protein sequences
Background: Proteins are comprised of one or several building blocks, known as domains. Such domains can be classified into families according to their evolutionary origin. Wherea...
Elon Portugaly, Amir Harel, Nathan Linial, Michal ...
PR
2006
84views more  PR 2006»
13 years 8 months ago
Clustering techniques for protein surfaces
Though most approaches to protein comparison are based on their structure, several studies produced evidence of a strict correlation between the surface characteristics of protein...
Lorenzo Baldacci, Matteo Golfarelli, Alessandra Lu...
RECOMB
2004
Springer
14 years 9 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
GCB
2006
Springer
99views Biometrics» more  GCB 2006»
14 years 7 days ago
Shape Distributions and Protein Similarity
: In this paper we describe a similarity model that provides the objective basis for clustering proteins of similar structure. More specifically, we consider the following variant ...
Stefan Canzar, Jan Remy
BMCBI
2007
128views more  BMCBI 2007»
13 years 8 months ago
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...
Lei Xie, Philip E. Bourne