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NAR
2007
152views more  NAR 2007»
13 years 7 months ago
COMPASS server for remote homology inference
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....
3DPVT
2004
IEEE
13 years 11 months ago
Local Approximate 3D Matching of Proteins in Viral Cryo-EM Density Maps
Experimental structure analysis of biological molecules (e.g, proteins) or macromolecular complexes (e.g, viruses) can be used to generate three-dimensional density maps of these e...
Stefan Burkhardt, Kimmo Fredriksson, Tuomas Ojamie...
BMCBI
2006
104views more  BMCBI 2006»
13 years 7 months ago
MANET: tracing evolution of protein architecture in metabolic networks
Background: Cellular metabolism can be characterized by networks of enzymatic reactions and transport processes capable of supporting cellular life. Our aim is to find evolutionar...
Hee Shin Kim, Jay E. Mittenthal, Gustavo Caetano-A...
AAAI
2006
13 years 9 months ago
Domain-Independent Structured Duplicate Detection
The scalability of graph-search algorithms can be greatly extended by using external memory, such as disk, to store generated nodes. We consider structured duplicate detection, an...
Rong Zhou, Eric A. Hansen
GECCO
2009
Springer
127views Optimization» more  GECCO 2009»
14 years 7 days ago
BBOB-benchmarking the Rosenbrock's local search algorithm
The restarted Rosenbrock’s optimization algorithm is tested on the BBOB 2009 testbed. The algorithm turned out to be very efficient for functions with simple structure (independ...
Petr Posik