COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....
Experimental structure analysis of biological molecules (e.g, proteins) or macromolecular complexes (e.g, viruses) can be used to generate three-dimensional density maps of these e...
Stefan Burkhardt, Kimmo Fredriksson, Tuomas Ojamie...
Background: Cellular metabolism can be characterized by networks of enzymatic reactions and transport processes capable of supporting cellular life. Our aim is to find evolutionar...
Hee Shin Kim, Jay E. Mittenthal, Gustavo Caetano-A...
The scalability of graph-search algorithms can be greatly extended by using external memory, such as disk, to store generated nodes. We consider structured duplicate detection, an...
The restarted Rosenbrock’s optimization algorithm is tested on the BBOB 2009 testbed. The algorithm turned out to be very efficient for functions with simple structure (independ...