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SODA
2003
ACM
106views Algorithms» more  SODA 2003»
13 years 8 months ago
Maintaining all-pairs approximate shortest paths under deletion of edges
We present a hierarchical scheme for efficiently maintaining all-pairs approximate shortest-paths in undirected unweighted graphs under deletions of edges. An α-approximate short...
Surender Baswana, Ramesh Hariharan, Sandeep Sen
WSC
1997
13 years 8 months ago
Multiplexed State Saving for Bounded Rollback
Optimistic parallel discrete event simulation (PDES) uses a state history trail to support rollback. State saving strategies range from making a complete copy of a model’s state...
Fabian Gomes, Brian Unger, John G. Cleary, Steve F...
BMCBI
2010
150views more  BMCBI 2010»
13 years 7 months ago
AMS 3.0: prediction of post-translational modifications
Background: We present here the recent update of AMS algorithm for identification of post-translational modification (PTM) sites in proteins based only on sequence information, us...
Subhadip Basu, Dariusz Plewczynski
BMCBI
2010
92views more  BMCBI 2010»
13 years 7 months ago
YODA: Software to facilitate high-throughput analysis of chronological life span, growth rate, and survival in budding yeast
Background: The budding yeast Saccharomyces cerevisiae is one of the most widely studied model organisms in aging-related science. Although several genetic modifiers of yeast long...
Brady Olsen, Christopher J. Murakami, Matt Kaeberl...
BMCBI
2007
135views more  BMCBI 2007»
13 years 7 months ago
Sequence similarity is more relevant than species specificity in probabilistic backtranslation
Background: Backtranslation is the process of decoding a sequence of amino acids into the corresponding codons. All synthetic gene design systems include a backtranslation module....
Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Al...