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» Querying Protein-Protein Interaction Networks
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RECOMB
2007
Springer
14 years 8 months ago
QNet: A Tool for Querying Protein Interaction Networks
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent e...
Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan R...
BMCBI
2006
147views more  BMCBI 2006»
13 years 7 months ago
QPath: a method for querying pathways in a protein-protein interaction network
Background: Sequence comparison is one of the most prominent tools in biological research, and is instrumental in studying gene function and evolution. The rapid development of hi...
Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sh...
SIGMOD
2011
ACM
204views Database» more  SIGMOD 2011»
12 years 10 months ago
Datalog and emerging applications: an interactive tutorial
We are witnessing an exciting revival of interest in recursive Datalog queries in a variety of emerging application domains such as data integration, information extraction, netwo...
Shan Shan Huang, Todd Jeffrey Green, Boon Thau Loo
ECCB
2008
IEEE
13 years 7 months ago
Temporal logic patterns for querying dynamic models of cellular interaction networks
Abstract: Models of the dynamics of cellular interaction networks have become increasingly larger in recent years. Formal verification based on model checking provides a powerful t...
Pedro T. Monteiro, Delphine Ropers, Radu Mateescu,...
RECOMB
2009
Springer
14 years 8 months ago
Topology-Free Querying of Protein Interaction Networks
Sharon Bruckner, Falk Hüffner, Richard M. Kar...