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BMCBI
2002
137views more  BMCBI 2002»
13 years 6 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2011
13 years 1 months ago
R2R - software to speed the depiction of aesthetic consensus RNA secondary structures
Background: With continuing identification of novel structured noncoding RNAs, there is an increasing need to create schematic diagrams showing the consensus features of these mol...
Zasha Weinberg, Ronald R. Breaker
EDBT
2009
ACM
113views Database» more  EDBT 2009»
14 years 1 months ago
Supporting annotations on relations
Annotations play a key role in understanding and curating databases. Annotations may represent comments, descriptions, lineage information, among several others. Annotation manage...
Mohamed Y. Eltabakh, Walid G. Aref, Ahmed K. Elmag...
QEST
2009
IEEE
14 years 1 months ago
Recent Extensions to Traviando
—Traviando is a trace analyzer and visualizer for simulation traces of discrete event dynamic systems. In this paper, we briefly outline recent extensions of Traviando towards a...
Peter Kemper
HPDC
2008
IEEE
14 years 1 months ago
XenLoop: a transparent high performance inter-vm network loopback
Advances in virtualization technology have focused mainly on strengthening the isolation barrier between virtual machines (VMs) that are co-resident within a single physical machi...
Jian Wang, Kwame-Lante Wright, Kartik Gopalan