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ICASSP
2007
IEEE
14 years 2 months ago
Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure
Protein structure prediction aims to determine the three-dimensional structure of proteins form their amino acid sequences. When a protein does not have similarity (homology) to a...
Zafer Aydin, Hakan Erdogan, Yucel Altunbasak
ARC
2007
Springer
102views Hardware» more  ARC 2007»
13 years 12 months ago
Reconfigurable Hardware Acceleration of Canonical Graph Labelling
Many important algorithms in computational biology and related subjects rely on the ability to extract and to identify sub-graphs of larger graphs; an example is to find common fun...
David B. Thomas, Wayne Luk, Michael Stumpf
FPL
2009
Springer
162views Hardware» more  FPL 2009»
13 years 11 months ago
Efficient particle-pair filtering for acceleration of molecular dynamics simulation
The acceleration of molecular dynamics (MD) simulations using high performance reconfigurable computing (HPRC) has been much studied. Given the intense competition from multicore...
Matt Chiu, Martin C. Herbordt
ICC
2011
IEEE
185views Communications» more  ICC 2011»
12 years 7 months ago
An Information-Theoretic Approach to Accelerated Simulation of Hybrid-ARQ Systems
—In order to reduce the long runtimes required to simulate hybrid automatic repeat-request (ARQ) systems, such as high-speed downlink packet access (HSDPA), we propose an informa...
Matthew C. Valenti
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
14 years 1 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling