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» Reconstructing Metabolic Networks Using Interval Analysis
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NC
2010
150views Neural Networks» more  NC 2010»
13 years 6 months ago
Deterministic and stochastic P systems for modelling cellular processes
This paper presents two approaches based on metabolic and stochastic P systems, together with their associated analysis methods, for modelling biological systems and illustrates th...
Marian Gheorghe, Vincenzo Manca, Francisco Jos&eac...
BMCBI
2007
131views more  BMCBI 2007»
13 years 7 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
BMCBI
2011
12 years 11 months ago
AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS
Background: Liquid chromatography-mass spectrometry (LC-MS) utilizing the high-resolution power of an orbitrap is an important analytical technique for both metabolomics and prote...
Hiroki Takahashi, Takuya Morimoto, Naotake Ogasawa...
HYBRID
2004
Springer
14 years 27 days ago
Understanding the Bacterial Stringent Response Using Reachability Analysis of Hybrid Systems
Abstract. In this paper we model coupled genetic and metabolic networks as hybrid systems. The vector fields are multi - affine, i.e., have only product - type nonlinearities to a...
Calin Belta, Peter Finin, Luc C. G. J. M. Habets, ...
IV
2009
IEEE
132views Visualization» more  IV 2009»
14 years 2 months ago
Visual Analysis of Overlapping Biological Networks
This investigates a new problem of visualizing a set of overlapping networks. We present two methods for constructing visualization of two and three overlapping networks in three ...
David Cho Yau Fung, Seok-Hee Hong, Dirk Koschü...