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» Reconstruction Algorithm for Permutation Graphs
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WABI
2007
Springer
14 years 2 months ago
Topology Independent Protein Structural Alignment
Abstract. Protein structural alignment is an indispensable tool used for many different studies in bioinformatics. Most structural alignment algorithms assume that the structural ...
Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta,...
MST
2002
169views more  MST 2002»
13 years 8 months ago
Bulk Synchronous Parallel Algorithms for the External Memory Model
Abstract. Blockwise access to data is a central theme in the design of efficient external memory (EM) algorithms. A second important issue, when more than one disk is present, is f...
Frank K. H. A. Dehne, Wolfgang Dittrich, David A. ...
RECOMB
2005
Springer
14 years 9 months ago
Reconstruction of Reticulate Networks from Gene Trees
Abstract. One of the simplest evolutionary models has molecular sequences evolving from a common ancestor down a bifurcating phylogenetic tree, experiencing point-mutations along t...
Daniel H. Huson, Tobias H. Klöpper, Pete J. L...
STACS
2007
Springer
14 years 2 months ago
New Approximation Algorithms for Minimum Cycle Bases of Graphs
We consider the problem of computing an approximate minimum cycle basis of an undirected non-negative edge-weighted graph G with m edges and n vertices; the extension to directed ...
Telikepalli Kavitha, Kurt Mehlhorn, Dimitrios Mich...
FTTCS
2006
132views more  FTTCS 2006»
13 years 8 months ago
Algorithms and Data Structures for External Memory
Data sets in large applications are often too massive to fit completely inside the computer's internal memory. The resulting input/output communication (or I/O) between fast ...
Jeffrey Scott Vitter